This book constitutes the refereed proceedings of the Fourth International Workshop on Pattern Recognition in Bioinformatics, PRIB 2009, held in Sheffield, UK, in September 2009.
The 38 revised full papers presented were carefully reviewed and selected from numerous submissions. The topics covered by these papers range from image analysis for biomedical data to systems biology. The conference aims at crating a focus for the development and application of pattern recognition techniques in the biological domain.
Author(s): Said Hassan Ahmed, Tor Flå (auth.), Visakan Kadirkamanathan, Guido Sanguinetti, Mark Girolami, Mahesan Niranjan, Josselin Noirel (eds.)
Series: Lecture Notes in Computer Science 5780 : Lecture Notes in Bioinformatics
Edition: 1
Publisher: Springer-Verlag Berlin Heidelberg
Year: 2009
Language: English
Pages: 452
Tags: Computational Biology/Bioinformatics; Health Informatics; Pattern Recognition; Data Mining and Knowledge Discovery; Computer Imaging, Vision, Pattern Recognition and Graphics; Artificial Intelligence (incl. Robotics)
Front Matter....Pages -
Evolutionary Parameters in Sequence Families....Pages 1-12
MProfiler: A Profile-Based Method for DNA Motif Discovery....Pages 13-23
On Utilizing Optimal and Information Theoretic Syntactic Modeling for Peptide Classification....Pages 24-35
Joint Tracking of Cell Morphology and Motion....Pages 36-45
Multiclass Microarray Gene Expression Analysis Based on Mutual Dependency Models....Pages 46-55
An Efficient Convex Nonnegative Network Component Analysis for Gene Regulatory Network Reconstruction....Pages 56-66
Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana ....Pages 67-78
Sequential Hierarchical Pattern Clustering....Pages 79-88
Syntactic Pattern Recognition Using Finite Inductive Strings....Pages 89-101
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data....Pages 102-112
Avoiding Spurious Feedback Loops in the Reconstruction of Gene Regulatory Networks with Dynamic Bayesian Networks....Pages 113-124
Ligand Electron Density Shape Recognition Using 3D Zernike Descriptors....Pages 125-136
Definition of Valid Proteomic Biomarkers: A Bayesian Solution....Pages 137-149
Inferring Meta-covariates in Classification....Pages 150-161
A Multiobjective Evolutionary Algorithm for Numerical Parameter Space Characterization of Reaction Diffusion Systems....Pages 162-174
Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands....Pages 175-186
Distinguishing Regional from Within-Codon Rate Heterogeneity in DNA Sequence Alignments....Pages 187-198
A Hybrid Metaheuristic for Biclustering Based on Scatter Search and Genetic Algorithms....Pages 199-210
Di-codon Usage for Gene Classification....Pages 211-221
Counting Patterns in Degenerated Sequences....Pages 222-232
Modelling Stem Cells Lineages with Markov Trees....Pages 233-243
Bi-clustering of Gene Expression Data Using Conditional Entropy....Pages 244-254
c-GAMMA:Comparative Genome Analysis of Molecular Markers....Pages 255-269
Semi-supervised Prediction of Protein Interaction Sentences Exploiting Semantically Encoded Metrics....Pages 270-281
Classification of Protein Interaction Sentences via Gaussian Processes....Pages 282-292
MCMC Based Bayesian Inference for Modeling Gene Networks....Pages 293-306
Efficient Optimal Multi-level Thresholding for Biofilm Image Segmentation....Pages 307-318
A Pattern Classification Approach to DNA Microarray Image Segmentation....Pages 319-330
Drugs and Drug-Like Compounds: Discriminating Approved Pharmaceuticals from Screening-Library Compounds....Pages 331-343
Fast SCOP Classification of Structural Class and Fold Using Secondary Structure Mining in Distance Matrix....Pages 344-353
Short Segment Frequency Equalization: A Simple and Effective Alternative Treatment of Background Models in Motif Discovery....Pages 354-364
Bayesian Optimization Algorithm for the Non-unique Oligonucleotide Probe Selection Problem....Pages 365-376
Microarray Time-Series Data Clustering via Multiple Alignment of Gene Expression Profiles....Pages 377-390
Recursive Neural Networks for Undirected Graphs for Learning Molecular Endpoints....Pages 391-403
Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of Occurrence....Pages 404-414
Patterns, Movement and Clinical Diagnosis of Abdominal Adhesions....Pages 415-426
Class Prediction from Disparate Biological Data Sources Using an Iterative Multi-Kernel Algorithm....Pages 427-438
Cross-Platform Analysis with Binarized Gene Expression Data....Pages 439-449
Back Matter....Pages -
