Numerical Methods for the Life Scientist: Binding and Enzyme Kinetics Calculated with GNU Octave and MATLAB

This document was uploaded by one of our users. The uploader already confirmed that they had the permission to publish it. If you are author/publisher or own the copyright of this documents, please report to us by using this DMCA report form.

Simply click on the Download Book button.

Yes, Book downloads on Ebookily are 100% Free.

Sometimes the book is free on Amazon As well, so go ahead and hit "Search on Amazon"

Enzyme kinetics, binding kinetics and pharmacological dose-response curves are currently analyzed by a few standard methods. Some of these, like Michaelis-Menten enzyme kinetics, use plausible approximations, others, like Hill equations for dose-response curves, are outdated. Calculating realistic reaction schemes requires numerical mathematical routines which usually are not covered in the curricula of life science. This textbook will give a step-by-step introduction to numerical solutions of non-linear and differential equations. It will be accompanied with a set of programs to calculate any reaction scheme on any personal computer. Typical examples from analytical biochemistry and pharmacology can be used as versatile templates. When a reaction scheme is applied for data fitting, the resulting parameters may not be unique. Correlation of parameters will be discussed and simplification strategies will be offered.

Author(s): Heino Prinz (auth.)
Edition: 1
Publisher: Springer-Verlag Berlin Heidelberg
Year: 2011

Language: English
Pages: 149
Tags: Bioinformatics; Computational Biology/Bioinformatics; Mathematical and Computational Biology

Front Matter....Pages i-ix
Introduction....Pages 1-4
The Basics....Pages 5-13
Classical Analytical Solutions....Pages 15-29
Getting Started with Octave....Pages 31-41
Equilibrium Binding....Pages 43-70
Binding Kinetics....Pages 71-96
Enzyme Kinetics....Pages 97-118
Fitting the Data....Pages 119-141
Appendix: Installing GNU Octave for Mac OS and Linux....Pages 143-145
Back Matter....Pages 147-149