Mathematical Methods for Protein Structure Analysis and Design: C.I.M.E. Summer School, Martina Franca, Italy, July 9-15, 2000. Advanced Lectures

This document was uploaded by one of our users. The uploader already confirmed that they had the permission to publish it. If you are author/publisher or own the copyright of this documents, please report to us by using this DMCA report form.

Simply click on the Download Book button.

Yes, Book downloads on Ebookily are 100% Free.

Sometimes the book is free on Amazon As well, so go ahead and hit "Search on Amazon"

The papers collected in this volume reproduce contributions by leading sch- arstoaninternationalschoolandworkshopwhichwasorganizedandheldwith thegoaloftakinga snapshotofadiscipline undertumultuous growth. Indeed, the area of protein folding, docking and alignment is developing in response to needs for a mix of heterogeneous expertise spanning biology, chemistry, mathematics, computer science, and statistics, among others. Some of the problems encountered in this area are not only important for the scienti?c challenges they pose, but also for the opportunities they disclose intermsofmedicalandindustrialexploitation. Atypicalexampleiso?eredby protein-drug interaction (docking), a problem posing daunting computational problems at the crossroads of geometry, physics and chemistry, and, at the same time, a problem with unimaginable implications for the pharmacopoeia of the future. The schoolfocused on problems posed by the study of the mechanisms - hind protein folding, and explored di?erent ways of attacking these problems under objective evaluations of the methods. Together with a relatively small core of consolidated knowledge and tools, important re?ections were brought to this e?ort by studies in a multitude of directions and approaches. It is obviously impossible to predict which, if any, among these techniques will prove completely successful, but it is precisely the implicit dialectic among them that best conveys the current ?avor of the ?eld. Such unique diversity and richness inspired the format of the meeting, and also explains the slight departure of the present volume from the typical format in this series: the exposition of the current sediment is complemented here by a selection of quali?ed specialized contributions.

Author(s): Giuseppe Lancia, Sorin Istrail (auth.), Concettina Guerra, Sorin Istrail (eds.)
Series: Lecture Notes in Computer Science 2666 : Lecture Notes in Bioinformatics
Edition: 1
Publisher: Springer-Verlag Berlin Heidelberg
Year: 2003

Language: English
Pages: 157
Tags: Algorithm Analysis and Problem Complexity; Discrete Mathematics in Computer Science; Database Management; Computer Graphics; Image Processing and Computer Vision; Bioinformatics

Front Matter....Pages -
Protein Structure Comparison: Algorithms and Applications....Pages 1-33
Spatial Pattern Detection in Structural Bionformatics....Pages 35-56
Geometric Methods for Protein Structure Comparison....Pages 57-82
Identifying Flat Regions and Slabs in Protein Structures....Pages 83-97
OPTIMA: A New Score Function for the Detection of Remote Homologs....Pages 99-108
A Comparison of Methods for Assessing the Structural Similarity of Proteins....Pages 109-115
Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks....Pages 117-122
Self-consistent Knowledge-Based Approach to Protein Design....Pages 123-129
Protein Structure from Solid-State NMR....Pages 131-137
Learning Effective Amino-Acid Interactions....Pages 139-145
Proteinlike Properties of Simple Models....Pages 147-153
Back Matter....Pages -