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Linking Literature, Information, and Knowledge for Biology: Workshop of the BioLink Special Interest Group, ISMB/ECCB 2009, Stockholm, June 28-29, 2009, Revised Selected Papers

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This volume of Lecture Notes in Bioinformatics contains selected papers from the workshop of the BioLINK Special Interest Group (SIG) on Linking Literature, Information and Knowledge for Biology. The workshop was held June 28- 29, 2009 at the ISMB/ECCB 2009 conference in Stockholm.

Author(s): Christian Blaschke, Lynette Hirschman, Hagit Shatkay, Alfonso Valencia (auth.), Christian Blaschke, Hagit Shatkay (eds.)
Series: Lecture Notes in Computer Science 6004 : Lecture Notes in Bioinformatics
Edition: 1
Publisher: Springer-Verlag Berlin Heidelberg
Year: 2010

Language: English
Pages: 81
Tags: Data Mining and Knowledge Discovery; Artificial Intelligence (incl. Robotics); Algorithm Analysis and Problem Complexity; Pattern Recognition; Image Processing and Computer Vision; Computational Biology/Bioinformatics

Front Matter....Pages -
Overview of the Ninth Annual Meeting of the BioLINK SIG at ISMB: Linking Literature, Information and Knowledge for Biology....Pages 1-7
Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns....Pages 8-18
Summary of the BioLINK Special Interest Group Session on the Future of Scientific Publishing....Pages 19-22
Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature....Pages 23-32
Toward Computer-Assisted Text Curation: Classification Is Easy (Choosing Training Data Can Be Hard...)....Pages 33-42
Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP....Pages 43-52
Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation....Pages 53-61
Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature....Pages 62-70
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library....Pages 71-80
Back Matter....Pages -