High Performance Computing for Computational Science — VECPAR 2002: 5th International Conference Porto, Portugal, June 26–28, 2002 Selected Papers and Invited Talks

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The 5th edition of the VECPAR series of conferences marked a change of the conference title. The full conference title now reads VECPAR 2002 — 5th Int- national Conference on High Performance Computing for Computational S- ence. This re?ects more accurately what has been the main emphasis of the conference since its early days in 1993 – the use of computers for solving pr- lems in science and engineering. The present postconference book includes the best papers and invited talks presented during the three days of the conference, held at the Faculty of Engineering of the University of Porto (Portugal), June 26–28 2002. The book is organized into 8 chapters, which as a whole appeal to a wide research community, from those involved in the engineering applications to those interested in the actual details of the hardware or software implementation, in line with what, in these days, tends to be considered as Computational Science and Engineering (CSE). The book comprises a total of 49 papers, with a prominent position reserved for the four invited talks and the two ?rst prizes of the best student paper competition.

Author(s): Rainald Löhner, Joseph D. Baum, Charles Charman, Daniele Pelessone (auth.), José M. L. M. Palma, A. Augusto Sousa, Jack Dongarra, Vicente Hernández (eds.)
Series: Lecture Notes in Computer Science 2565
Edition: 1
Publisher: Springer-Verlag Berlin Heidelberg
Year: 2003

Language: English
Pages: 738
Tags: Software Engineering/Programming and Operating Systems; Computer Communication Networks; Algorithm Analysis and Problem Complexity; Mathematics of Computing; Bioinformatics; Mathematical and Computational Physics

Fluid-Structure Interaction Simulations Using Parallel Computers....Pages 3-23
Investigation of Turbulent Flame Kernels Using DNS on Clusters....Pages 24-38
A Parallel, State-of-the-Art, Least-Squares Spectral Element Solver for Incompressible Flow Problems....Pages 39-52
Edge-Based Interface Elements for Solution of Three- Dimensional Geomechanical Problems....Pages 53-64
Finite Element Simulation of Seismic Elastic Two Dimensional Wave Propagation: Development and Assessment of Performance in a Cluster of PCs with Software DSM....Pages 65-78
Parallel Implementation for Probabilistic Analysis of 3D Discrete Cracking in Concrete....Pages 79-93
An A Posteriori Error Estimator for Adaptive Mesh Refinement Using Parallel In-Element Particle Tracking Methods....Pages 94-107
High Performance Data Mining....Pages 111-125
Data Mining for Data Classification Based on the KNN-Fuzzy Method Supported by Genetic Algorithm....Pages 126-133
Lignin Biosynthesis and Degradation — a Major Challenge for Computational Chemistry....Pages 137-165
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures....Pages 166-180
Visualization of RNA Pseudoknot Structures....Pages 181-194
The Cactus Framework and Toolkit: Design and Applications....Pages 197-227
Performance of Message-Passing MATLAB Toolboxes....Pages 228-242
Evaluating the Performance of Space Plasma Simulations Using FPGA’s....Pages 242-254
Remote Parallel Model Reduction of Linear Time-Invariant Systems Made Easy....Pages 255-268
An Approach to Teaching Computer Arithmetic....Pages 269-283
Fast Sparse Matrix-Vector Multiplication for TeraFlop/s Computers....Pages 287-301
Performance Evaluation of Parallel Gram-Schmidt Re-orthogonalization Methods....Pages 302-314
Toward Memory-Efficient Linear Solvers....Pages 315-328
A Parallel Newton-GMRES Algorithm for Solving Large Scale Nonlinear Systems....Pages 328-342
Preconditioning for an Iterative Elliptic Solver on a Vector Processor....Pages 343-353
2-D R-Matrix Propagation: A Large Scale Electron Scattering Simulation Dominated by the Multiplication of Dynamically Changing Matrices....Pages 354-367
A Parallel Implementation of the Atkinson Algorithm for Solving a Fredholm Equation....Pages 368-376
SLEPc: Scalable Library for Eigenvalue Problem Computations....Pages 377-391
Parallelization of Spectral Element Methods....Pages 392-403
Mapping Unstructured Applications into Nested Parallelism Best Student Paper Award: First Prize....Pages 407-420
An Efficient Parallel and Distributed Algorithm for Counting Frequent Sets....Pages 421-435
A Framework for Integrating Network Information into Distributed Iterative Solution of Sparse Linear Systems....Pages 436-447
Efficient Hardware Implementation of Modular Multiplication and Exponentiation for Public-Key Cryptography....Pages 451-463
Real-Time Visualization of Wake-Vortex Simulations Using Computational Steering and Beowulf Clusters....Pages 464-478
PALM: A Dynamic Parallel Coupler....Pages 479-492
A Null Message Count of a Conservative Parallel Simulation....Pages 493-506
Static Scheduling with Interruption Costs for Computer Vision Applications....Pages 509-522
A Parallel Rendering Algorithm Based on Hierarchical Radiosity....Pages 523-536
A High-Performance Progressive Radiosity Method Based on Scene Partitioning....Pages 537-548
Wavelet Transform for Large Scale Image Processing on Modern Microprocessors....Pages 549-562
An Expandable Parallel File System Using NFS Servers....Pages 565-578
Scalable Multithreading in a Low Latency Myrinet Cluster....Pages 579-593
Minimizing Paging Tradeoffs Applying Coscheduling Techniques in a Linux Cluster....Pages 593-607
Introducing the Vector C....Pages 608-621
Mobile Agent Programming for Clusters with Parallel Skeletons....Pages 622-635
Translating Haskell # Programs into Petri Nets....Pages 635-649
An Efficient Multi-processor Architecture for Parallel Cyclic Reference Counting....Pages 650-663
ROS: The Rollback-One-Step Method to Minimize the Waiting Time during Debugging Long-Running Parallel Programs....Pages 664-678
Distributed Paged Hash Tables....Pages 679-693
A Meta-heuristic Approach to Parallel Code Generation....Pages 693-702
Semidefinite Programming for Graph Partitioning with Preferences in Data Distribution....Pages 703-716
A Development Environment for Multilayer Neural Network Applications Mapped onto DSPs with Multiprocessing Capabilities....Pages 717-730