Bayesian Networks in R: with Applications in Systems Biology

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Bayesian Networks in R with Applications in Systems Biology is unique as it introduces the reader to the essential concepts in Bayesian network modeling and inference in conjunction with examples in the open-source statistical environment R. The level of sophistication is also gradually increased across the chapters with exercises and solutions for enhanced understanding for hands-on experimentation of the theory and concepts. The application focuses on systems biology with emphasis on modeling pathways and signaling mechanisms from high-throughput molecular data. Bayesian networks have proven to be especially useful abstractions in this regard. Their usefulness is especially exemplified by their ability to discover new associations in addition to validating known ones across the molecules of interest. It is also expected that the prevalence of publicly available high-throughput biological data sets may encourage the audience to explore investigating novel paradigms using the approaches presented in the book.

Author(s): Radhakrishnan Nagarajan, Marco Scutari, Sophie Lèbre (auth.)
Series: Use R! 48
Edition: 1
Publisher: Springer-Verlag New York
Year: 2013

Language: English
Pages: 157
City: New York, NY
Tags: Statistics and Computing/Statistics Programs; Statistical Theory and Methods; Programming Languages, Compilers, Interpreters

Front Matter....Pages i-xiii
Introduction....Pages 1-12
Bayesian Networks in the Absence of Temporal Information....Pages 13-58
Bayesian Networks in the Presence of Temporal Information....Pages 59-83
Bayesian Network Inference Algorithms....Pages 85-101
Parallel Computing for Bayesian Networks....Pages 103-123
Back Matter....Pages 125-157