Plant Transposable Elements: Biology and Biotechnology

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This new volume provides an up-to-date understanding of the numerous classes of plant transposable elements, the mobile units of DNA that comprise large portions of plant genomes, which are an important contributor for gene and genome evolution. Transposable elements (TEs) are major components of large plant genomes and main drivers of genome evolution, known to produce a wide variety of changes in plant gene expression and function. Providing a systematic interpretation of protocols designed to characterize TEs and their biotechnological roles, the volume explores TEs in plant development, their architecture, their epigenetic regulation, their use in DNA repair, their evolution and speciation, while also highlighting their importance in the approaching epoch of climate change. The volume begins with introduction of transposable elements, covering their classification and transposition. It delves into protocols designed to characterize TEs and their biotechnological applications. The book includes computational approaches for prediction and analysis, retro-transposon capture sequencing, and more. The section on transposon biology focuses on its role in plant development and as natural genetic engineers of genome mutation, evolution, and speciation. The book looks further into transposon applications in genome editing, exploring tagging and mutagenesis, genome engineering, and more.

Author(s): Deepu Pandita, Anu Pandita
Publisher: CRC Press/Apple Academic Press
Year: 2023

Language: English
Pages: 389
City: Palm Bay

Cover
Half Title
Title Page
Copyright Page
About the Editors
Dedication
Table of Contents
Contributors
Abbreviations
Preface
Part I: Introduction to Transposable Elements (TEs)
1. Introduction, Classification, and Transposition of Transposable Elements (TEs)
2. DNA Transposons
Part II: Protocols Designed to Characterize TEs and Biotechnological Applications
3. Computational Approaches for Prediction and Analysis of Transposable Elements in Plants
4. Annotation of Transposable Elements in the Evolution of Plant Genome Biology
5. Retrotransposon Capture Sequencing (RC-Seq)
Part III: Transposon Biology
6. Transposable Elements and Plant Development
7. Transposons as Natural Genetic Engineers of Genome Mutation, Evolution, and Speciation
8. Transposable Elements and Epigenetic Regulation
9. Transposable Elements and Polyploidy in Plants
10. Transposable Elements and Plant Architecture
11. Regulation of Transposable Elements in Plant Genomes
12. Transposable Elements and DNA Repair at Cellular Level
Part IV: Transposon Applications in Genome Editing
13. Role of Transposable Elements in Plants Under Abiotic Stress Response
14. Genome Engineering in Plants via Transposable Elements
15. Transposon Tagging and Mutagenesis
Part V: TEs of Model Plants
16. Classification, Structure, Function, and Evolution of Transposable Elements in Oryza sativa
Index